For PHoeNIx >=2.0.0 you will need to download the public Standard-8 version kraken2 database created on or after March 14th, 2023 from Ben Langmead's github page. You CANNOT use …

PHoeNIx was built and is maintained by the CDC's Division of Healthcare Quality Promotion (DHQP) to standardize pathogen surveillance and support public health laboratories in their …

🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens - CDCgov/phoenix

This step is only run with -entry CDC_PHOENIX. The mast distance is calculated from a pre-calculated sketch of all complete refseq bacteria created with Mash and the top 20 best isolate …

Dec 6, 2024 · The full PHoeNIx pipeline (-entry PHOENIX or -entry CDC_PHOENIX) only runs on Illumina paired-end reads. Multiple samples can be run using a samplesheet.csv file

Feb 28, 2022 · Members of the public who are visiting a city facility with an appointment, can do so without having to wear a mask when Maricopa County is at a low or medium community …

Sep 30, 2021 · In 2022, the Arizona Childhood Lead Poisoning Prevention Program (AZ CLPPP) observed a sharp increase in the number of refugee children with blood lead levels (BLLs) …

For information on vaccine eligibility, safety information, and other topics, please visit the CDC Vaccines for COVID-19 website. Need help over the phone? People without computer access …

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens - CDCgov/phoenix

May 19, 2021 · Phoenix's mask rules now conform with the latest CDC guidelines and will automatically adjust to follow any future recommendations on mask use from the federal agency.